Welcome back everybody to Beyond the Patterns. Today we have another invited presentation
and today I want to introduce Jinwei Zhang, who is a PhD student at Cornell MRI Research
Lab under the supervision of Jing Wang. The current focus of his work is to develop AI-based
methods to optimize the sampling and reconstruction process of MRI and especially quantitative
susceptibility mapping with multi-echo image acquisition and reconstruction.
Prior to Cornell he obtained a Bachelor of Science in Physics from Sun Yat-sen University.
So it's a great pleasure to have Jinwei here and his presentation is entitled Probabilistic
Dipole Inversion for Adaptive Quantitative Susceptibility Mapping and without further
ado, I'm very happy to announce Jinwei and the stage as yours.
Thank you Professor Miao, thank you for the introduction. Hi everyone, today I'm going
to show our work using probabilistic approach to solve the dipole inversion inverse problem
in quantitative susceptibility mapping. So the inverse problem we are solving here is
called quantitative susceptibility mapping, QSM. So QSM tries to solve the tissue susceptibility
chi from the magnetic field B and it's a spatial decomposition process with the dipole
kernel Loracus D and also with some measurement noise N. So if you look at an image space
it's a spatial decomposition process with the spatial dipole kernel and if you transform
this dipole kernel in k-space you will see this zero-coin surface in k-space. So because
of zero-coin, when you do this division in k-space that will cause some earplugs in the
QSM dipole inversion problem. So here this one is a typical local field and this is the
QSM we solve from this local field. So QSM is a developed contrast in the MRI that can
quantify some of the biomarkers in the tissue such as iron, calcium and gadolinium. So we
will see some of the applications of QSM in clinical diagnosis. So this is the QSM inverse
problem we are solving here. And there are some prior works in our lab that solve this
dipole inversion numerous problem in QSM. So for first approach is called Cosmos. So since
we know that there is a zero-coin in k-space of the dipole kernel, so we try to eliminate
this zero-coin by using multiple orientation scans. Because if we only use one scan we
will have this zero-coin. But if we rotate the main negative field by a certain angle,
such as for example if we scan three times using three different main negative field
direction, we can just cancel out this zero-coin. So this will make the earplugs inverse problem
in QSM well posed. So this is called Cosmos. So Cosmos has been the golden standard QSM
for both the algorithm development and clinical papers. But the drawback of Cosmos is very
obvious. It requires multiple orientation scan, which is not that feasible for clinical
verification. So another approach, more feasible approach, is called METI. So this is a single
orientation scan. So in single orientation we always have this zero-coin, which costs
the earplugs in QSM. So in order to tackle this earplugs, some prior or validation term
is needed. So here we use this structure information. So this is called binary value of the routine
matrix on the three spatial dimensions. So here we impose this to the variation of the
relation to surprise the artifact introduced by the zero-coin outside the tissue brain.
So this M is the mask outside the tissue brain. Then we solve this optimization problem using
iterative construction solver, such as conjugate brain descent, ADMM, or primal dual. So METI,
I think is a pioneer work using the regularized construction to solve QSM inverse problem.
And since METI, there are a lot of other works following this prior work, either changing
the relation term or using some other advanced solver or even deep learning-based solver.
So this is Cosmos METI. So the motivation of this work is that given the prior distribution
of stability and also the likelihood distribution, can we solve the full posterior distribution
of chi given the local field d? But if you look at the METI, let me go back, if you look
at the METI likelihood and the prior, the analytical form of the posterior stability
given the local field d will be intractable. So this is the intractable problem. So we
need some approximation inference method, such as Markov-Chamberl-Decalov version inference.
But that traditional approximate method is time-consuming and it requires running on
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2021-05-12
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We just had the great pleasure to welcome Jinwei Zhang to our lab for a presentation on his latest research.
Abstract: A learning-based posterior distribution estimation method, Probabilistic Dipole Inversion (PDI), is proposed to solve the quantitative susceptibility mapping (QSM) inverse problem in MRI with uncertainty estimation. In PDI, a deep convolutional neural network (CNN) is used to represent the multivariate Gaussian distribution as the approximate posterior distribution of susceptibility given the input measured field. Such CNN is first trained on healthy subjects via posterior density estimation, where the training dataset contains samples from the true posterior distribution. Domain adaptations are then deployed on patient datasets with new pathologies not included in pre-training, where PDI updates the pre-trained CNN’s weights in an unsupervised fashion by minimizing the Kullback-Leibler divergence between the approximate posterior distribution represented by CNN and the true posterior distribution from the likelihood distribution of a known physical model and pre-defined prior distribution. Based on our experiments, PDI provides additional uncertainty estimation compared to the conventional MAP approach, while addressing the potential issue of the pre-trained CNN when test data deviates from training.
Short Bio: Jinwei Zhang is a Ph.D. student in Cornell MRI research lab, under the supervision of Yi Wang. The current focus of his work is to develop AI-based methods to optimize the sampling and reconstruction process of MRI, especially quantitative susceptibility mapping with multi-echo image acquisition and reconstruction. Prior to Cornell, he obtained a B.S. in physics from Sun-Yat-sen university.
References
Paper https://www.melba-journal.org/article/21200-probabilistic-dipole-inversion-for-adaptive-quantitative-susceptibility-mapping
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